IL_7SSL_185

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_185 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1946

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7SSL|1|1|U|1864
7SSL|1|1|U|1865
7SSL|1|1|A|1866
7SSL|1|1|G|1867
*
7SSL|1|1|C|1874
7SSL|1|1|G|1875
7SSL|1|1|A|1876
7SSL|1|1|A|1877
7SSL|1|1|G|1878

Current chains

Chain 1

23S rRNA

Nearby chains