IL_7SSL_205

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_205 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4471

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7SSL|1|1|C|274
7SSL|1|1|C|275
7SSL|1|1|U|276
7SSL|1|1|G|277
7SSL|1|1|A|278
7SSL|1|1|A|279
7SSL|1|1|U|280
7SSL|1|1|C|281
*
7SSL|1|1|G|359
7SSL|1|1|U|360
7SSL|1|1|G|361
7SSL|1|1|A|362
7SSL|1|1|G|363

Current chains

Chain 1

23S rRNA

Nearby chains