IL_7SSN_027

3D structure

PDB id

7SSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSN_027 not in the Motif Atlas

Homologous match to IL_5J7L_273

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7SSN|1|1|U|870
7SSN|1|1|U|871
7SSN|1|1|U|872
*
7SSN|1|1|A|905
7SSN|1|1|U|906
7SSN|1|1|G|907

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16