IL_7SSO_056

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSO_056 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3859

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7SSO|1|1|G|1473
7SSO|1|1|U|1474
7SSO|1|1|G|1475
7SSO|1|1|U|1476
7SSO|1|1|A|1477
7SSO|1|1|G|1478
*
7SSO|1|1|U|1513
7SSO|1|1|G|1514
7SSO|1|1|A|1515
7SSO|1|1|G|1516
7SSO|1|1|G|1517
7SSO|1|1|C|1518

Current chains

Chain 1

23S rRNA

Nearby chains