3D structure

PDB id
7SSO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGA*UA
Length
5 nucleotides
Bulged bases
7SSO|1|3|G|31
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SSO_109 not in the Motif Atlas
Homologous match to IL_6CZR_113
Geometric discrepancy: 0.2252
The information below is about IL_6CZR_113
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.12
Basepair signature
cWW-L-cWW
Number of instances in this motif group
52

Unit IDs

7SSO|1|3|U|30
7SSO|1|3|G|31
7SSO|1|3|A|32
*
7SSO|1|3|U|552
7SSO|1|3|A|553

Current chains

Chain 3
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


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