IL_7SSO_118

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSO_118 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1348

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7SSO|1|3|C|132
7SSO|1|3|U|133
7SSO|1|3|G|134
7SSO|1|3|C|135
7SSO|1|3|C|136
*
7SSO|1|3|G|227
7SSO|1|3|A|228
7SSO|1|3|U|229
7SSO|1|3|G|230

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain Y

30S ribosomal protein S20