IL_7SSW_019

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_019 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1848

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7SSW|1|1|U|703
7SSW|1|1|G|704
7SSW|1|1|A|705
7SSW|1|1|A|706
7SSW|1|1|G|707
*
7SSW|1|1|U|724
7SSW|1|1|G|725
7SSW|1|1|G|726
7SSW|1|1|A|727
7SSW|1|1|G|728

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2