IL_7SSW_110

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

7SSW|1|3|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_110 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.2379

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7SSW|1|3|A|44
7SSW|1|3|G|45
*
7SSW|1|3|C|396
7SSW|1|3|A|397
7SSW|1|3|U|398

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16