IL_7SSW_118

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_118 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.3314

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7SSW|1|3|G|144
7SSW|1|3|G|145
7SSW|1|3|G|146
7SSW|1|3|G|147
*
7SSW|1|3|C|175
7SSW|1|3|C|176
7SSW|1|3|G|177
7SSW|1|3|C|178

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20