IL_7SSW_126

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

7SSW|1|3|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_126 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2473

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7SSW|1|3|U|375
7SSW|1|3|G|376
7SSW|1|3|G|377
*
7SSW|1|3|C|386
7SSW|1|3|U|387
7SSW|1|3|G|388
7SSW|1|3|A|389

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16