IL_7SSW_180

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAGCG*CGUGAUG

Length

13 nucleotides

Bulged bases

7SSW|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSW_180 not in the Motif Atlas

Homologous match to IL_4WF9_058

Geometric discrepancy: 0.2609

The information below is about IL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88190.1

Basepair signature

cWW-L-R-tHS-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7SSW|1|1|U|1468
7SSW|1|1|A|1469
7SSW|1|1|A|1470
7SSW|1|1|G|1471
7SSW|1|1|C|1472
7SSW|1|1|G|1473
*
7SSW|1|1|C|1518
7SSW|1|1|G|1519
7SSW|1|1|U|1520
7SSW|1|1|G|1521
7SSW|1|1|A|1522
7SSW|1|1|U|1523
7SSW|1|1|G|1524

Current chains

Chain 1

23S rRNA

Nearby chains