IL_7ST6_064

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7ST6|1|1|U|1714, 7ST6|1|1|G|1715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST6_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1973

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7ST6|1|1|U|1712
7ST6|1|1|A|1713
7ST6|1|1|U|1714
7ST6|1|1|G|1715
7ST6|1|1|U|1716
7ST6|1|1|A|1717
7ST6|1|1|G|1718
*
7ST6|1|1|U|1742
7ST6|1|1|G|1743
7ST6|1|1|A|1744
7ST6|1|1|A|1745
7ST6|1|1|A|1746

Current chains

Chain 1

23S rRNA

Nearby chains