IL_7ST6_141

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGAG*UGGAC

Length

11 nucleotides

Bulged bases

7ST6|1|3|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST6_141 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3568

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7ST6|1|3|G|661
7ST6|1|3|U|662
7ST6|1|3|A|663
7ST6|1|3|G|664
7ST6|1|3|A|665
7ST6|1|3|G|666
*
7ST6|1|3|U|740
7ST6|1|3|G|741
7ST6|1|3|G|742
7ST6|1|3|A|743
7ST6|1|3|C|744

Current chains

Chain 3

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S6

Chain T

30S ribosomal protein S15

Chain W

30S ribosomal protein S18