IL_7ST6_180

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCA*UGAU

Length

7 nucleotides

Bulged bases

7ST6|1|1|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST6_180 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2291

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7ST6|1|1|G|1770
7ST6|1|1|C|1771
7ST6|1|1|A|1772
*
7ST6|1|1|U|1979
7ST6|1|1|G|1980
7ST6|1|1|A|1981
7ST6|1|1|U|1982

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2