IL_7ST7_029
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ST7_029 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.209
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7ST7|1|1|G|875
7ST7|1|1|C|876
7ST7|1|1|A|877
7ST7|1|1|A|878
7ST7|1|1|G|879
*
7ST7|1|1|C|898
7ST7|1|1|A|899
7ST7|1|1|A|900
7ST7|1|1|C|901
7ST7|1|1|C|902
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain m
- 50S ribosomal protein L16
Coloring options: