3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
7ST7|1|1|A|1127, 7ST7|1|1|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ST7_036 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0967
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

7ST7|1|1|G|1024
7ST7|1|1|G|1025
7ST7|1|1|G|1026
7ST7|1|1|A|1027
7ST7|1|1|A|1028
7ST7|1|1|A|1029
7ST7|1|1|C|1030
*
7ST7|1|1|G|1124
7ST7|1|1|G|1125
7ST7|1|1|A|1126
7ST7|1|1|A|1127
7ST7|1|1|G|1128
7ST7|1|1|A|1129
7ST7|1|1|U|1130
7ST7|1|1|G|1131
7ST7|1|1|U|1132
7ST7|1|1|A|1133
7ST7|1|1|A|1134
7ST7|1|1|C|1135
7ST7|1|1|G|1136
7ST7|1|1|G|1137
7ST7|1|1|G|1138
7ST7|1|1|G|1139
7ST7|1|1|C|1140

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L36
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain m
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1868 s