IL_7ST7_064

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7ST7|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.175

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7ST7|1|1|U|1712
7ST7|1|1|A|1713
7ST7|1|1|U|1714
7ST7|1|1|G|1715
7ST7|1|1|U|1716
7ST7|1|1|A|1717
7ST7|1|1|G|1718
*
7ST7|1|1|U|1742
7ST7|1|1|G|1743
7ST7|1|1|A|1744
7ST7|1|1|A|1745
7ST7|1|1|A|1746

Current chains

Chain 1

23S rRNA

Nearby chains