IL_7ST7_135

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7ST7|1|3|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_135 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1597

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7ST7|1|3|C|569
7ST7|1|3|G|570
7ST7|1|3|U|571
7ST7|1|3|A|572
7ST7|1|3|A|573
7ST7|1|3|A|574
7ST7|1|3|G|575
*
7ST7|1|3|C|880
7ST7|1|3|G|881

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain V

30S ribosomal protein S17