IL_7ST7_161

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_161 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2095

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

7ST7|1|3|C|1129
7ST7|1|3|A|1130
7ST7|1|3|G|1131
7ST7|1|3|C|1132
*
7ST7|1|3|G|1142
7ST7|1|3|G|1143

Current chains

Chain 3

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10