IL_7ST7_194

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGUA*UAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_194 not in the Motif Atlas

Homologous match to IL_6CZR_124

Geometric discrepancy: 0.3305

The information below is about IL_6CZR_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38684.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ST7|1|3|U|249
7ST7|1|3|A|250
7ST7|1|3|G|251
7ST7|1|3|U|252
7ST7|1|3|A|253
*
7ST7|1|3|U|273
7ST7|1|3|A|274
7ST7|1|3|G|275

Current chains

Chain 3

16S rRNA

Nearby chains

Chain V

30S ribosomal protein S17