IL_7SYG_043

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_043 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1697

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7SYG|1|2|G|874
7SYG|1|2|A|875
7SYG|1|2|C|876
*
7SYG|1|2|G|910
7SYG|1|2|C|911
7SYG|1|2|C|912

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17