IL_7SYG_052

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_052 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2026

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7SYG|1|2|A|1042
7SYG|1|2|G|1043
7SYG|1|2|G|1044
7SYG|1|2|U|1045
7SYG|1|2|U|1046
7SYG|1|2|C|1047
*
7SYG|1|2|G|1071
7SYG|1|2|U|1072
7SYG|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26