IL_7SYG_058

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

7SYG|1|2|C|1215, 7SYG|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|C|1213
7SYG|1|2|A|1214
7SYG|1|2|C|1215
7SYG|1|2|C|1216
7SYG|1|2|A|1217
*
7SYG|1|2|U|1681
7SYG|1|2|C|1682
7SYG|1|2|C|1683
7SYG|1|2|C|1684
7SYG|1|2|U|1685
7SYG|1|2|G|1686

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28