IL_7SYG_073

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

7SYG|1|2|G|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_073 not in the Motif Atlas

Geometric match to IL_7A0S_017

Geometric discrepancy: 0.3933

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7SYG|1|2|C|1412
7SYG|1|2|G|1413
*
7SYG|1|2|C|1427
7SYG|1|2|G|1428
7SYG|1|2|G|1429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19