IL_7SYG_096

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAGGGCAAGUC*GCUC

Length

15 nucleotides

Bulged bases

7SYG|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|G|598
7SYG|1|2|A|599
7SYG|1|2|G|600
7SYG|1|2|G|601
7SYG|1|2|G|602
7SYG|1|2|C|603
7SYG|1|2|A|604
7SYG|1|2|A|605
7SYG|1|2|G|606
7SYG|1|2|U|607
7SYG|1|2|C|608
*
7SYG|1|2|G|635
7SYG|1|2|C|636
7SYG|1|2|U|637
7SYG|1|2|C|638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30