IL_7SYG_099

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGGCCGGGG*CAAGAAUG

Length

17 nucleotides

Bulged bases

7SYG|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|C|927
7SYG|1|2|G|928
7SYG|1|2|G|929
7SYG|1|2|C|930
7SYG|1|2|C|931
7SYG|1|2|G|932
7SYG|1|2|G|933
7SYG|1|2|G|934
7SYG|1|2|G|935
*
7SYG|1|2|C|1007
7SYG|1|2|A|1008
7SYG|1|2|A|1009
7SYG|1|2|G|1010
7SYG|1|2|A|1011
7SYG|1|2|A|1012
7SYG|1|2|U|1013
7SYG|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain O

uS15

Chain b

eS26

Chain c

eS27