IL_7SYG_101

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGGUUCGAAG*CGUAGUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|A|1042
7SYG|1|2|G|1043
7SYG|1|2|G|1044
7SYG|1|2|U|1045
7SYG|1|2|U|1046
7SYG|1|2|C|1047
7SYG|1|2|G|1048
7SYG|1|2|A|1049
7SYG|1|2|A|1050
7SYG|1|2|G|1051
*
7SYG|1|2|C|1067
7SYG|1|2|G|1068
7SYG|1|2|U|1069
7SYG|1|2|A|1070
7SYG|1|2|G|1071
7SYG|1|2|U|1072
7SYG|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26