IL_7SYG_105

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGCAUGGC*GUCUGUGAUG

Length

18 nucleotides

Bulged bases

7SYG|1|2|C|1331, 7SYG|1|2|U|1494, 7SYG|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_105 not in the Motif Atlas

Homologous match to IL_8C3A_505

Geometric discrepancy: 0.2699

The information below is about IL_8C3A_505

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06463.1

Basepair signature

cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7SYG|1|2|U|1329
7SYG|1|2|G|1330
7SYG|1|2|C|1331
7SYG|1|2|A|1332
7SYG|1|2|U|1333
7SYG|1|2|G|1334
7SYG|1|2|G|1335
7SYG|1|2|C|1336
*
7SYG|1|2|G|1491
7SYG|1|2|U|1492
7SYG|1|2|C|1493
7SYG|1|2|U|1494
7SYG|1|2|G|1495
7SYG|1|2|U|1496
7SYG|1|2|G|1497
7SYG|1|2|A|1498
7SYG|1|2|U|1499
7SYG|1|2|G|1500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29