IL_7SYG_108

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYG|1|2|U|1585, 7SYG|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|G|1541
7SYG|1|2|C|1542
7SYG|1|2|U|1543
7SYG|1|2|C|1544
7SYG|1|2|A|1545
7SYG|1|2|G|1546
7SYG|1|2|C|1547
7SYG|1|2|G|1548
7SYG|1|2|U|1549
7SYG|1|2|G|1550
*
7SYG|1|2|C|1582
7SYG|1|2|C|1583
7SYG|1|2|G|1584
7SYG|1|2|U|1585
7SYG|1|2|U|1586
7SYG|1|2|G|1587
7SYG|1|2|A|1588
7SYG|1|2|A|1589
7SYG|1|2|C|1590
7SYG|1|2|C|1591
7SYG|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

40S ribosomal protein S25

Chain e

eS29