IL_7SYG_116

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

7SYG|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|A|1282
7SYG|1|2|C|1283
7SYG|1|2|A|1284
7SYG|1|2|G|1285
7SYG|1|2|G|1286
7SYG|1|2|A|1287
7SYG|1|2|U|1288
7SYG|1|2|U|1289
7SYG|1|2|G|1290
*
7SYG|1|2|C|1309
7SYG|1|2|U|1310
7SYG|1|2|C|1311
7SYG|1|2|G|1312
7SYG|1|2|A|1313
7SYG|1|2|U|1314
7SYG|1|2|U|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain e

eS29

Chain g

40S ribosomal protein S27a