IL_7SYK_019

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7SYK|1|2|U|367, 7SYK|1|2|U|368, 7SYK|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3467

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7SYK|1|2|U|366
7SYK|1|2|U|367
7SYK|1|2|U|368
7SYK|1|2|C|369
7SYK|1|2|G|370
7SYK|1|2|A|371
*
7SYK|1|2|U|393
7SYK|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17