IL_7SYK_057

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUGGCGA*UUGUACA

Length

14 nucleotides

Bulged bases

7SYK|1|2|G|1207, 7SYK|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|U|1202
7SYK|1|2|U|1203
7SYK|1|2|G|1204
7SYK|1|2|G|1205
7SYK|1|2|C|1206
7SYK|1|2|G|1207
7SYK|1|2|A|1208
*
7SYK|1|2|U|1691
7SYK|1|2|U|1692
7SYK|1|2|G|1693
7SYK|1|2|U|1694
7SYK|1|2|A|1695
7SYK|1|2|C|1696
7SYK|1|2|A|1697

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain b

eS26 (S26)

Chain n

60s ribosomal protein l41