IL_7SYK_059

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_059 not in the Motif Atlas

Geometric match to IL_4KNQ_002

Geometric discrepancy: 0.1539

The information below is about IL_4KNQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7SYK|1|2|C|1230
7SYK|1|2|C|1231
7SYK|1|2|U|1232
*
7SYK|1|2|G|1526
7SYK|1|2|C|1527
7SYK|1|2|G|1528

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain T

uS13

Chain U

eS19