IL_7SYK_069
3D structure
- PDB id
- 7SYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAUGCUA*UAGAGG
- Length
- 13 nucleotides
- Bulged bases
- 7SYK|1|2|U|1397
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYK_069 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3983
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYK|1|2|C|1395
7SYK|1|2|A|1396
7SYK|1|2|U|1397
7SYK|1|2|G|1398
7SYK|1|2|C|1399
7SYK|1|2|U|1400
7SYK|1|2|A|1401
*
7SYK|1|2|U|1445
7SYK|1|2|A|1446
7SYK|1|2|G|1447
7SYK|1|2|A|1448
7SYK|1|2|G|1449
7SYK|1|2|G|1450
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain h
- RACK1
Coloring options: