IL_7SYK_074
3D structure
- PDB id
- 7SYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UACG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYK_074 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7SYK|1|2|U|1560
7SYK|1|2|A|1561
7SYK|1|2|C|1562
7SYK|1|2|G|1563
*
7SYK|1|2|C|1572
7SYK|1|2|G|1573
7SYK|1|2|C|1574
7SYK|1|2|G|1575
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain U
- eS19
Coloring options: