IL_7SYK_074

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_074 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7SYK|1|2|U|1560
7SYK|1|2|A|1561
7SYK|1|2|C|1562
7SYK|1|2|G|1563
*
7SYK|1|2|C|1572
7SYK|1|2|G|1573
7SYK|1|2|C|1574
7SYK|1|2|G|1575

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19