IL_7SYK_104

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYK|1|2|U|1585, 7SYK|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|G|1541
7SYK|1|2|C|1542
7SYK|1|2|U|1543
7SYK|1|2|C|1544
7SYK|1|2|A|1545
7SYK|1|2|G|1546
7SYK|1|2|C|1547
7SYK|1|2|G|1548
7SYK|1|2|U|1549
7SYK|1|2|G|1550
*
7SYK|1|2|C|1582
7SYK|1|2|C|1583
7SYK|1|2|G|1584
7SYK|1|2|U|1585
7SYK|1|2|U|1586
7SYK|1|2|G|1587
7SYK|1|2|A|1588
7SYK|1|2|A|1589
7SYK|1|2|C|1590
7SYK|1|2|C|1591
7SYK|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25 (S25)

Chain e

eS29