IL_7SYK_107

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7SYK|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYK_107 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3527

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7SYK|1|2|C|37
7SYK|1|2|A|38
7SYK|1|2|A|39
7SYK|1|2|A|40
*
7SYK|1|2|U|514
7SYK|1|2|G|515
7SYK|1|2|A|516
7SYK|1|2|C|517
7SYK|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4