IL_7SYL_006
3D structure
- PDB id
- 7SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYL_006 not in the Motif Atlas
- Geometric match to IL_4V88_389
- Geometric discrepancy: 0.2422
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
7SYL|1|2|U|57
7SYL|1|2|C|58
7SYL|1|2|U|59
7SYL|1|2|A|60
7SYL|1|2|A|61
7SYL|1|2|G|62
*
7SYL|1|2|C|86
7SYL|1|2|U|87
7SYL|1|2|G|88
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain H
- eS6
- Chain Z
- 40S ribosomal protein S24
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