IL_7SYL_015

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_015 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.3801

The information below is about IL_1U6B_002

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7SYL|1|2|C|188
7SYL|1|2|U|189
7SYL|1|2|G|190
7SYL|1|2|A|191
7SYL|1|2|C|192
*
7SYL|1|2|G|207
7SYL|1|2|G|208
7SYL|1|2|A|209
7SYL|1|2|U|210
7SYL|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8