3D structure

PDB id
7SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
ACAGGAUUGA*UCUCGAUU
Length
18 nucleotides
Bulged bases
7SYL|1|2|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7SYL|1|2|A|1282
7SYL|1|2|C|1283
7SYL|1|2|A|1284
7SYL|1|2|G|1285
7SYL|1|2|G|1286
7SYL|1|2|A|1287
7SYL|1|2|U|1288
7SYL|1|2|U|1289
7SYL|1|2|G|1290
7SYL|1|2|A|1291
*
7SYL|1|2|U|1308
7SYL|1|2|C|1309
7SYL|1|2|U|1310
7SYL|1|2|C|1311
7SYL|1|2|G|1312
7SYL|1|2|A|1313
7SYL|1|2|U|1314
7SYL|1|2|U|1315

Current chains

Chain 2
18S rRNA

Nearby chains

Chain L
eS10
Chain N
eS12
Chain e
eS29
Chain g
40S ribosomal protein S27a

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1238 s