IL_7SYL_072

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

7SYL|1|2|A|1580, 7SYL|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|G|1550
7SYL|1|2|U|1551
7SYL|1|2|G|1552
7SYL|1|2|C|1553
7SYL|1|2|C|1554
7SYL|1|2|U|1555
7SYL|1|2|A|1556
7SYL|1|2|C|1557
7SYL|1|2|C|1558
*
7SYL|1|2|G|1577
7SYL|1|2|U|1578
7SYL|1|2|A|1579
7SYL|1|2|A|1580
7SYL|1|2|C|1581
7SYL|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29