IL_7SYL_094

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGCCGGGG*CAAGAAUG

Length

17 nucleotides

Bulged bases

7SYL|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|C|927
7SYL|1|2|G|928
7SYL|1|2|G|929
7SYL|1|2|C|930
7SYL|1|2|C|931
7SYL|1|2|G|932
7SYL|1|2|G|933
7SYL|1|2|G|934
7SYL|1|2|G|935
*
7SYL|1|2|C|1007
7SYL|1|2|A|1008
7SYL|1|2|A|1009
7SYL|1|2|G|1010
7SYL|1|2|A|1011
7SYL|1|2|A|1012
7SYL|1|2|U|1013
7SYL|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain b

eS26 (S26)

Chain c

eS27