IL_7SYL_105

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCCCC*GAGCGC

Length

11 nucleotides

Bulged bases

7SYL|1|2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|G|1749
7SYL|1|2|C|1750
7SYL|1|2|C|1751
7SYL|1|2|C|1752
7SYL|1|2|C|1753
*
7SYL|1|2|G|1780
7SYL|1|2|A|1781
7SYL|1|2|G|1782
7SYL|1|2|C|1783
7SYL|1|2|G|1784
7SYL|1|2|C|1785

Current chains

Chain 2

18S rRNA

Nearby chains