IL_7SYL_107

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7SYL|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYL_107 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.3045

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7SYL|1|2|U|366
7SYL|1|2|U|367
7SYL|1|2|U|368
7SYL|1|2|C|369
7SYL|1|2|G|370
7SYL|1|2|A|371
*
7SYL|1|2|U|393
7SYL|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17