IL_7SYM_014

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_014 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.2969

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7SYM|1|2|C|188
7SYM|1|2|U|189
7SYM|1|2|G|190
7SYM|1|2|A|191
7SYM|1|2|C|192
*
7SYM|1|2|G|207
7SYM|1|2|G|208
7SYM|1|2|A|209
7SYM|1|2|U|210
7SYM|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8