IL_7SYM_035

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGUAGUU*AAUCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|C|676
7SYM|1|2|G|677
7SYM|1|2|U|678
7SYM|1|2|A|679
7SYM|1|2|G|680
7SYM|1|2|U|681
7SYM|1|2|U|682
*
7SYM|1|2|A|1023
7SYM|1|2|A|1024
7SYM|1|2|U|1025
7SYM|1|2|C|1026
7SYM|1|2|A|1027
7SYM|1|2|A|1028
7SYM|1|2|G|1029

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12