IL_7SYM_038

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGGCG*CCCG

Length

9 nucleotides

Bulged bases

7SYM|1|2|C|753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_038 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3361

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7SYM|1|2|C|750
7SYM|1|2|G|751
7SYM|1|2|G|752
7SYM|1|2|C|753
7SYM|1|2|G|754
*
7SYM|1|2|C|790
7SYM|1|2|C|791
7SYM|1|2|C|792
7SYM|1|2|G|793

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6