IL_7SYM_053
3D structure
- PDB id
- 7SYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYM_053 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.388
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYM|1|2|C|1098
7SYM|1|2|G|1099
7SYM|1|2|A|1100
7SYM|1|2|U|1101
7SYM|1|2|G|1102
7SYM|1|2|C|1103
*
7SYM|1|2|G|1129
7SYM|1|2|G|1130
7SYM|1|2|G|1131
7SYM|1|2|C|1132
7SYM|1|2|A|1133
7SYM|1|2|G|1134
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein SA
- Chain C
- 40S ribosomal protein S3a
- Chain O
- uS15
- Chain S
- eS17
- Chain b
- eS26 (S26)
- Chain c
- eS27
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