IL_7SYM_054
3D structure
- PDB id
- 7SYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GCGU*ACC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYM_054 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3975
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7SYM|1|2|G|1108
7SYM|1|2|C|1109
7SYM|1|2|G|1110
7SYM|1|2|U|1111
*
7SYM|1|2|A|1122
7SYM|1|2|C|1123
7SYM|1|2|C|1124
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein SA
- Chain C
- 40S ribosomal protein S3a
- Chain S
- eS17
- Chain c
- eS27
- Chain z
- Internal ribosome entry site; IRES
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