IL_7SYM_070

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

7SYM|1|2|G|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYM_070 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3696

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7SYM|1|2|C|1412
7SYM|1|2|G|1413
*
7SYM|1|2|C|1427
7SYM|1|2|G|1428
7SYM|1|2|G|1429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19